Archive for January, 2008

POSTGRESQL-IE: An Image-handling Extension for PostgreSQL

by Guliato, Denise; Melo, Ernani V.; Rangayyan, Rangaraj M.; Soares, Robson C.

The last decade witnessed a growing interest in research on content-based image retrieval (CBIR) and related areas. Several systems for managing and retrieving images have been proposed, each one tailored to a specific application. Functionalities commonly available in CBIR systems include: storage and management of complex data, development of feature extractors to support similarity queries, development of index structures to speed up image retrieval, and design and implementation of an intuitive graphical user interface tailored to each application. To facilitate the development of new CBIR systems, we propose an image-handling extension to the relational database management system (RDBMS) PostgreSQL. This extension, called PostgreSQL-IE, is independent of the application and provides the advantage of being open source and portable. The proposed system extends the functionalities of the structured query language SQL with new functions that are able to create new feature extraction procedures, new feature vectors as combinations of previously defined features, and new access methods, as well as to compose similarity queries. PostgreSQL-IE makes available a new image data type, which permits the association of various images with a given unique image attribute. This resource makes it possible to combine visual features of different images in the same feature vector. To validate the concepts and resources available in the proposed extended RDBMS, we propose a CBIR system applied to the analysis of mammograms using PostgreSQL-IE.

DOI: 10.1007/s10278-007-9097-5
Online Date: 1/23/2008
Print publication date: 4/1/2009
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Automatic Delineation of the Diaphragm in Computed Tomographic Images

by Rangayyan, Rangaraj M.; Vu, Randy H.; Boag, Graham S.

Segmentation of the internal organs in medical images is a difficult task. By incorporating a priori information regarding specific organs of interest, results of segmentation may be improved. Landmarking (i.e., identifying stable structures to aid in gaining more knowledge concerning contiguous structures) is a promising segmentation method. Specifically, segmentation of the diaphragm may help in limiting the scope of segmentation methods to the abdominal cavity; the diaphragm may also serve as a stable landmark for identifying internal organs, such as the liver, the spleen, and the heart. A method to delineate the diaphragm is proposed in the present work. The method is based upon segmentation of the lungs, identification of the lower surface of the lungs as an initial representation of the diaphragm, and the application of least-squares modeling and deformable contour models to obtain the final segmentation of the diaphragm. The proposed procedure was applied to nine X-ray computed tomographic (CT) exams of four pediatric patients with neuroblastoma. The results were evaluated against the boundaries of the diaphragm as identified independently by a radiologist. Good agreement was observed between the results of segmentation and the reference contours drawn by the radiologist, with an average mean distance to the closest point of 5.85 mm over a total of 73 CT slices including the diaphragm.

DOI: 10.1007/s10278-007-9091-y
Online Date: 1/23/2008
Print publication date: 10/1/2008
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A New Family of Distance Functions for Perceptual Similarity Retrieval of Medical Images

by Felipe, Joaquim Cezar; Traina, Caetano; Traina, Agma Juci Machado

A long-standing challenge of content-based image retrieval (CBIR) systems is the definition of a suitable distance function to measure the similarity between images in an application context which complies with the human perception of similarity. In this paper, we present a new family of distance functions, called attribute concurrence influence distances (AID), which serve to retrieve images by similarity. These distances address an important aspect of the psychophysical notion of similarity in comparisons of images: the effect of concurrent variations in the values of different image attributes. The AID functions allow for comparisons of feature vectors by choosing one of two parameterized expressions: one targeting weak attribute concurrence influence and the other for strong concurrence influence. This paper presents the mathematical definition and implementation of the AID family for a two-dimensional feature space and its extension to any dimension. The composition of the AID family with L
p distance family is considered to propose a procedure to determine the best distance for a specific application. Experimental results involving several sets of medical images demonstrate that, taking as reference the perception of the specialist in the field (radiologist), the AID functions perform better than the general distance functions commonly used in CBIR.

DOI: 10.1007/s10278-007-9084-x
Online Date: 1/11/2008
Print publication date: 4/1/2009
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Power Spectral Analysis of Mammographic Parenchymal Patterns for Breast Cancer Risk Assessment

by Li, Hui; Giger, Maryellen L.; Olopade, Olufunmilayo I.; Chinander, Michael R.

The purpose of the study was to evaluate the usefulness of power law spectral analysis on mammographic parenchymal patterns in breast cancer risk assessment. Mammograms from 172 subjects (30 women with the BRCA1/BRCA2 gene mutation and 142 low-risk women) were retrospectively collected and digitized. Because age is a very important risk factor, 60 low-risk women were randomly selected from the 142 low-risk subjects and were age matched to the 30 gene mutation carriers. Regions of interest were manually selected from the central breast region behind the nipple of these digitized mammograms and subsequently used in power spectral analysis. The power law spectrum of the form $$P\left( f \right) = {B \mathord{\left/ {\vphantom {B {f^\beta }}} \right. \kern-\nulldelimiterspace} {f^\beta }}$$ was evaluated for the mammographic patterns. The performance of exponent as a decision variable for differentiating between gene mutation carriers and low-risk women was assessed using receiver operating characteristic analysis for both the entire database and the age-matched subset. Power spectral analysis of mammograms demonstrated a statistically significant difference between the 30 BRCA1/BRCA2 gene mutation carriers and the 142 low risk women with an average values of 2.92 (±0.28) and 2.47(±0.20), respectively. An
z value of 0.90 was achieved in distinguishing between gene mutation carriers and low-risk women in the entire database, with an
z value of 0.89 being achieved on the age-matched subset. The BRCA1/BRCA2 gene mutation carriers and low-risk women have different mammographic parenchymal patterns. It is expected that women identified as high risk by computerized feature analyses might potentially be more aggressively screened for breast cancer.

DOI: 10.1007/s10278-007-9093-9
Online Date: 1/3/2008
Print publication date: 6/1/2008
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